Reconstruction of marine communities in search of baseline (pristine) conditions is a crucial first step for their future restoration. A recent reconstruction (last century) of the sandy-muddy bottom fauna on the continental shelf of a marine protected area (MPA) was performed in the Columbretes Reserve, including periods after and before the Reserve declaration. The dating of sediments and identification of faunal remains (e.g., shells of benthic bivalves and gastropods and pelagic pteropods) were performed in a core (MC2) at a depth of 87 m in 2018. Radiometric data identified sediments older (below 11 cm) and younger (from the top of the core to 11 cm) than ca. 110 years. Mercury analyses validated the 210Pbxs data at 5–7 cm (1967–1989), with a significant Hg peak that coincided with a period of military activities occurring until 1982 in the Columbretes Islands. Both human and climatic variables affected benthic and pelagic communities. Among the human impacts, the cessation of trawling activity after the declaration of the MPA (1980s) influenced the most dominant benthos (bivalves and gastropods) by i) increases in their abundance and ii) changes in the feeding guilds, with a return to baseline conditions by the increase in filter feeders after trawling cessation vs a high abundance of detritus feeders occurring under high trawling activity. Human activities apparently did not affect diversity levels. In parallel, we also identified some recolonization by Octocorallia since the 1980s. Finally, the increase in the pelagic pteropod Creseis acicula since 1995 at the MC2 station probably indicates the result of warming of surface waters in recent decades. Our study based on core reconstructions provides for the first time an historical perspective of the impact of trawling on marine benthos and the positive effect of conservation measures in marine protected areas. © 2022 The Authors

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